Information for 5-CAGCCAAGTGTGG (Motif 7)

A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
Reverse Opposite:
G T A C A G T C G T C A A G T C C T G A G T A C C G A T A G C T C T A G A C T G A T G C G A C T A T C G
p-value:1e-13
log p-value:-3.142e+01
Information Content per bp:1.770
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.8 +/- 25.4bp
Average Position of motif in Background66.6 +/- 22.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGTGTGG--
GCAGCCAAGCGTGACN
 A C G T A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCAAGTGTGG-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAGTGTGG-
SCAGYCADGCATGAC
 A C G T A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGTGTGG
AAGGCAAGTGT--
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGCCAAGTGTGG
--GCCACGTGT--
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
A C G T A C G T A C T G G T A C A T G C C G T A A G T C A C T G A C G T A T C G C A G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CAGCCAAGTGTGG
-TGCCAA------
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CAGCCAAGTGTGG
--ACCATATGTT-
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGTGTGG
CGTGCCAAG-----
 A C G T A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

ZBTB18/MA0698.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGTGTGG
CATCCAGATGTTC
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G
G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

PB0047.1_Myf6_1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGCCAAGTGTGG---
CNGACACCTGTTCNNN
 A T G C C G T A A T C G A G T C A G T C T C G A C G T A A C T G A G C T C T A G A C G T T A C G A C T G A C G T A C G T A C G T
T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C