Information for 7-GGATTTCTAA (Motif 20)

A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A
Reverse Opposite:
C A G T A C G T C G T A T A C G G T C A C G T A G T C A A G C T A T G C A G T C
p-value:1e-9
log p-value:-2.275e+01
Information Content per bp:1.835
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif162.4
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets52.8 +/- 26.5bp
Average Position of motif in Background50.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----GGATTTCTAA--
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGATTTCTAA-----
AGNGTTCTAATGANN
 A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTCTAA--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGATTTCTAA
CGGTTTCAAA
 A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGATTTCTAA
NGGGATTA----
 A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GGATTTCTAA
CNGTGATTTN---
 A C G T A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GGATTTCTAA--
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGATTTCTAA
GGGAATTTCC--
 A C G T A C G T A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGATTTCTAA--
AGGTCTCTAACC
 A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

PB0187.1_Tcf7_2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGATTTCTAA-----
NNNTTTNTAATACNG
 A C T G A T C G C T G A A C G T A C G T A C G T A T G C C G A T T C G A G T C A A C G T A C G T A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G