Information for 3-TGMHCTNTKN (Motif 2)

A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G
Reverse Opposite:
T G A C G T A C C G T A T C G A C G T A C A T G C A T G C A G T T A G C G T C A
p-value:1e-20
log p-value:-4.834e+01
Information Content per bp:1.574
Number of Target Sequences with motif126.0
Percentage of Target Sequences with motif15.54%
Number of Background Sequences with motif2883.4
Percentage of Background Sequences with motif6.08%
Average Position of motif in Targets52.0 +/- 28.1bp
Average Position of motif in Background50.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TGMHCTNTKN--
NNNGTGACCTTTGNNN
 A C G T A C G T A C G T A C G T A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TGMHCTNTKN
CTGACCTTTG-
 A C G T A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGMHCTNTKN--
TGACCTTTNCNT
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T
A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TGMHCTNTKN--
NNNNTGACCTTTNNNN
 A C G T A C G T A C G T A C G T A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGMHCTNTKN------
TGGACTTTGNNCTNTG
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGMHCTNTKN-----
TGACCTTTGCCCTAN
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGMHCTNTKN-----
TGGACTTTGNNCTCN
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGMHCTNTKN----
TGACCTTTGCCCTA
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGMHCTNTKN----
TGACCTTTGCCCCA
 A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G A C G T A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGMHCTNTKN
GTGACCTT---
 A C G T A C G T A T C G G T C A G T A C G T A C G C A T A G C T G C A T C A T G A C T G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T