Information for 5-VAGATYATKATCA (Motif 6)

T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A
Reverse Opposite:
C G A T A C T G C G T A A C G T G T A C C G T A A C G T C T G A C T G A C G A T A G T C C G A T A G T C
p-value:1e-17
log p-value:-4.109e+01
Information Content per bp:1.643
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif223.3
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets44.8 +/- 24.1bp
Average Position of motif in Background47.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-VAGATYATKATCA-
NNAGATNVNWATCTN
 A C G T T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T
C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:VAGATYATKATCA---
-TAATGATGATCACTA
 T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T A C G T
A C G T C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

GATA2/MA0036.2/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:VAGATYATKATCA--
-AGATTCTTATCTGT
 T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T
A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

PB0174.1_Sox30_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-VAGATYATKATCA--
TAAGATTATAATACGG
 A C G T T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-VAGATYATKATCA--
NANTATTATAATTNNN
 A C G T T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

GATA5/MA0766.1/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:VAGATYATKATCA
-----TCTTATCT
 T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A G C T A T G C G A C T C G A T C G T A A G C T A G T C C G A T

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-VAGATYATKATCA--
NNTAATTATAATNANN
 A C G T T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T
G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0023.1_Gata6_1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:VAGATYATKATCA-----
-NNANTCTTATCTNNNNN
 T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C G T A G C T A G A C T A C G T A T G C C G A T C G A T C T G A C G A T G T A C C G A T G T A C A C G T G C T A C A G T G C T A

PB0064.1_Sox14_1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-VAGATYATKATCA--
GCTAATTATAATTATC
 A C G T T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:VAGATYATKATCA
-----YSTTATCT
 T A C G C G T A T C A G C G T A G A C T G A C T G T C A C G A T C A T G C G T A A C G T G T A C G C T A
A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T