Information for 4-CACAVHAGGAAAGATV (Motif 13)

A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
Reverse Opposite:
A C T G T G C A A C G T A T G C A C G T A G C T A C G T A G T C A G T C A G C T C A G T A C G T C G A T A T C G C G A T A C T G
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.752
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.0 +/- 23.5bp
Average Position of motif in Background34.7 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CACAVHAGGAAAGATV
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACAVHAGGAAAGATV
GAGCACAGCAGGACA----
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CACAVHAGGAAAGATV
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACAVHAGGAAAGATV
CACAGCAGGGGG----
 A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CACAVHAGGAAAGATV--
------AGGAAACAGCTG
 A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CACAVHAGGAAAGATV
DCHCAGCAGGRGGCC--
 A C G T A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

NFATC3/MA0625.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACAVHAGGAAAGATV
----AATGGAAAAT--
 A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
A C G T A C G T A C G T A C G T C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CACAVHAGGAAAGATV
----NNTGGAAANN--
 A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
A C G T A C G T A C G T A C G T C G T A C T G A G A C T C T A G A C T G C T G A C T G A G C T A C G T A G C A T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CACAVHAGGAAAGATV
---NDCAGGAARTNN-
 A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
A C G T A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACAVHAGGAAAGATV
DCTCAGCAGG-------
 A C G T A G T C G C T A A T G C C G T A T G C A G T C A C T G A A C T G C T A G C G T A C T G A C G T A T A C G C G T A A C G T T G A C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T