Information for 23-CTAATCCCTCCAG (Motif 22)

A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A T C G C T G A A C T G A C T G A C T G C G T A A G C T A C G T C G T A A T C G
p-value:1e-5
log p-value:-1.269e+01
Information Content per bp:1.892
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.0 +/- 27.7bp
Average Position of motif in Background65.3 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----CTAATCCCTCCAG
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTCCAG
GNNAGCTAATCCCCCN--
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCTCCAG
GCTAATCCCC----
 A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCTCCAG
CTTAATCCC-----
 A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCTCCAG
NYTAATCCYB----
 A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTCCAG
GANNATTAATCCCTNNN-
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A A C G T

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTCCAG
NNNAATTAATCCCCNCN-
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCTCCAG
CCTAATCCGC----
 A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCTCCAG
NANANTTAATCCCNNNN-
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTAATCCCTCCAG
YTAATCCY-----
 A T G C A C G T C G T A C T G A A C G T A G T C A G T C A G T C A G C T A T G C A G T C C G T A A C T G
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T