Information for 22-GGAGCTGCCAGKGCYT (Motif 41)

A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
Reverse Opposite:
C T G A C T A G A C T G A G T C G T A C A G T C A C G T A C T G A C T G A T G C C G T A A C T G A G T C A C G T A G T C A G T C
p-value:1e-8
log p-value:-1.861e+01
Information Content per bp:1.801
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.3 +/- 34.5bp
Average Position of motif in Background43.0 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGCCAGKGCYT
CGGAGC-----------
 A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGAGCTGCCAGKGCYT
GGACCACCCACG----
 A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGAGCTGCCAGKGCYT
-----TGCCAA-----
 A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGAGCTGCCAGKGCYT
---CGTGCCAAG----
 A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGAGCTGCCAGKGCYT
----TTGCCAAG----
 A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGCCAGKGCYT
AACGAGCTGTCAATAC--
 A C G T A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGCCAGKGCYT
AACTAGCTGTCAATAC--
 A C G T A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCTGCCAGKGCYT
NNNCAGCTGTCAATATN-
 A C G T A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGAGCTGCCAGKGCYT
AAAGACCTGTCAATCC--
 A C G T A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTGCCAGKGCYT
GGGAGGACNG-------
 A C G T A C T G A C T G T C G A A C T G A G T C C G A T A T C G A G T C A G T C C G T A C T A G A C G T C T A G A G T C A G C T A G C T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T