Information for 21-AAAGGCRCAGACACCT (Motif 39)

C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
Reverse Opposite:
C T G A A C T G A C T G A C G T T A C G A G C T A G T C A C G T A T C G G A T C C T A G A G T C G T A C A C G T A C G T A C G T
p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.739
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.3 +/- 22.7bp
Average Position of motif in Background61.4 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT----
----NNGGCGACACCTCNNN
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT
--------TGACACCT
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT
------CCAGACRSVB
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAAGGCRCAGACACCT
AGCGGCACACACGCAA
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

TBX5/MA0807.1/Jaspar

Match Rank:5
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT
--------TCACACCT
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T

ID4/MA0824.1/Jaspar

Match Rank:6
Score:0.53
Offset:9
Orientation:forward strand
Alignment:AAAGGCRCAGACACCT---
---------TACACCTGTC
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT
------CCAGACAG--
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:9
Orientation:forward strand
Alignment:AAAGGCRCAGACACCT---
---------NNCACCTGNN
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT
------BCAGACWA--
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:AAAGGCRCAGACACCT---
----------NCACCTGTN
 C G T A T C G A T C G A A C T G C T A G A G T C C T A G A T G C C G T A T A C G C T G A A G T C C G T A T G A C A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T