Information for 1-DGGCCGGCTGGAGRGG (Motif 3)

C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
Reverse Opposite:
A G T C A T G C A G C T A G T C C G A T A T G C A G T C C G T A A C T G A T G C A T G C A C T G A C T G A G T C A G T C G A C T
p-value:1e-13
log p-value:-3.144e+01
Information Content per bp:1.800
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.3 +/- 23.0bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----DGGCCGGCTGGAGRGG
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.55
Offset:7
Orientation:forward strand
Alignment:DGGCCGGCTGGAGRGG-
-------BTBRAGTGSN
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:forward strand
Alignment:DGGCCGGCTGGAGRGG
-GGCCYCCTGCTGDGH
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:DGGCCGGCTGGAGRGG
-VBSYGTCTGG-----
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:DGGCCGGCTGGAGRGG--
-------CTTGAGTGGCT
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--DGGCCGGCTGGAGRGG-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:forward strand
Alignment:DGGCCGGCTGGAGRGG
---CTGTCTGG-----
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:DGGCCGGCTGGAGRGG-
-------CTYRAGTGSY
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:DGGCCGGCTGGAGRGG
-GACCCCCCGCTGTGC
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:DGGCCGGCTGGAGRGG
-NNVCAGCTGB-----
 C A G T A C T G C T A G G T A C A G T C A T C G T A C G A G T C A C G T C T A G A T C G C G T A A C T G C T A G A T C G A C T G
A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T A C G T A C G T A C G T