Information for 9-GGGKSAGMCAACA (Motif 27)

C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
Reverse Opposite:
A C G T T C A G A G C T A C G T A C T G A C T G A G T C A C G T T A C G T G C A T G A C A G T C A G T C
p-value:1e-9
log p-value:-2.081e+01
Information Content per bp:1.762
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif27.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets55.4 +/- 29.6bp
Average Position of motif in Background44.6 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GGGKSAGMCAACA
---BCAGACWA--
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGGKSAGMCAACA
---CGTGCCAAG-
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGGKSAGMCAACA
-----TGCCAA--
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGGKSAGMCAACA
---WAAGTAAAYA
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGGKSAGMCAACA
---CCAGACAG--
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGGKSAGMCAACA--
CAAATCCAGACATCACA
 A C G T A C G T C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGGKSAGMCAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGGKSAGMCAACA--
---TATGTAAACANG
 C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGGKSAGMCAACA
AGGTGNCAGACAG--
 A C G T A C G T C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGGKSAGMCAACA
AGGTGHCAGACA---
 A C G T A C G T C T A G C T A G A C T G A C G T A T C G C G T A A C T G G T A C A G T C C G T A C T G A A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T