Information for 5-WKAARTGCCATKA (Motif 11)

C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T G T A C C G T A C G A T A C T G A C T G G T A C C G T A A G C T A C G T A C G T G T A C C G A T
p-value:1e-11
log p-value:-2.550e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 30.3bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:WKAARTGCCATKA---
--AAAAACCATTAAGG
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Myb/MA0100.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:WKAARTGCCATKA
CCAACTGCCA---
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:WKAARTGCCATKA
TTAAGTGC-----
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:WKAARTGCCATKA--
-----GGCCATTAAC
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:WKAARTGCCATKA
---GGTGCCAAGT
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WKAARTGCCATKA
---CGTGCCAAG-
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---WKAARTGCCATKA
CGACCAACTGCCATGC
 A C G T A C G T A C G T C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:WKAARTGCCATKA
--GTCCGCCATTA
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:WKAARTGCCATKA-
------BCMATTAG
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:WKAARTGCCATKA
TTAAGTGGN----
 C G T A A C T G C G T A C G T A C T G A A C G T A C T G A G T C A G T C C G T A A C G T A C T G C G T A
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T