Information for 4-TGGCTKCTKSCCM (Motif 4)

C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
Reverse Opposite:
A C T G A C T G A C T G A T G C G T A C C G T A A C T G G T A C C G T A A C T G A G T C A T G C C G T A
p-value:1e-17
log p-value:-4.034e+01
Information Content per bp:1.873
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.1 +/- 22.8bp
Average Position of motif in Background47.5 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGGCTKCTKSCCM
CTGGCAGNCTGCCA
 A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGGCTKCTKSCCM-
CTTGGCANNNTGCCAA
 A C G T A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTKCTKSCCM
TTGGCATGGTGCCA
 A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGGCTKCTKSCCM
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGCTKCTKSCCM-
TGACCTTTGCCCTA
 C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGCTKCTKSCCM-
TGACCTTTGCCCCA
 C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGGCTKCTKSCCM
--GCTTCC-----
 C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGGCTKCTKSCCM--
TGACCTTTGCCCTAN
 C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCTKCTKSCCM
TTGGCA--------
 A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCTKCTKSCCM
TWGTCTGV------
 A C G T C G A T A T C G C T A G A G T C A C G T A C T G G T A C A C G T A C T G A T C G A G T C A G T C G T A C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T