Information for 4-AGAGGTCAGC (Motif 3)

C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
Reverse Opposite:
A T C G A G T C A C G T A T C G G C T A G A T C A G T C A C G T A G T C C G A T
p-value:1e-17
log p-value:-4.094e+01
Information Content per bp:1.837
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif176.5
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets51.0 +/- 28.0bp
Average Position of motif in Background49.6 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AGAGGTCAGC
AGRGGTCA--
 C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:AGAGGTCAGC
TRAGGTCA--
 C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGAGGTCAGC
CAAAGGTCAG-
 A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AGAGGTCAGC--
CAAAGGTCAAGGG
 A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCAGC--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AGAGGTCAGC
--AGGTCA--
 C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCAGC---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCAGC--
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:9
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGTCAGC
ANGNAAAGGTCA--
 A C G T A C G T A C G T A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGAGGTCAGC
ATCAAGGTCA--
 A C G T A C G T C G T A C T A G T G C A A C T G C T A G C G A T A T G C C G T A C T A G A T G C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T