Information for 9-TGCCCCAATT (Motif 10)

A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G C T C T A G A C T G A C T G A C T G A T G C C G T A
p-value:1e-11
log p-value:-2.744e+01
Information Content per bp:1.828
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif50.2
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.4 +/- 25.8bp
Average Position of motif in Background54.4 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TGCCCCAATT
TGACCTARTT
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCCAATT---
TTGACCTANTTATN
 A C G T A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PH0029.1_En2/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCCCCAATT-------
TGCACTAATTAGTGGAA
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G G T A C T G C A G A T C G A C T G C T A C G T A C G A T C A G T C T G A C T A G A G C T A T C G T C A G G C T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGCCCCAATT
TGACCT----
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGCCCCAATT-------
TGCGCTAATTAGTGGGA
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A

PH0110.1_Nkx1-2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCCCAATT-------
TGNACTAATTAGTGNAN
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C

PH0089.1_Isx/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCCCAATT------
ACNNCTAATTAGNNNN
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PH0009.1_Bsx/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCCAATT-----
NTNAGNTAATTACCTN
 A C G T A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C G A C T A T C G T C G A C T A G A T C G G A C T T G C A G T C A A C G T A C G T C T G A G T A C G A T C A C G T A C T G

PH0090.1_Lbx2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCCCCAATT-------
TGCATTAATTAATGCGA
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T A C G G T A C G T C A G A C T G A C T C G T A T C G A A G C T C G A T C T G A C T G A A G C T A C T G T A G C C T A G T C G A

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCCCAATT
TGACCTTGAT
 A C G T A T C G G T A C A G T C G T A C A G T C C T G A G T C A A C G T A C G T
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T