Information for 6-CTGGCAYMCTTGG (Motif 8)

A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C G T C A C G T A A T C G A C G T C T G A A C G T A C T G A G T C A G T C C G T A A C T G
p-value:1e-12
log p-value:-2.776e+01
Information Content per bp:1.821
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets26.5 +/- 15.7bp
Average Position of motif in Background50.2 +/- 18.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGGCAYMCTTGG
-TGACCTARTT--
 A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAYMCTTGG
GGTCTGGCAT------
 A C G T A C G T A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAYMCTTGG
NTTGGCANN-----
 A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTGGCAYMCTTGG
TTGGCA-------
 A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAYMCTTGG
CTTGGCAA------
 A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAYMCTTGG
GGTTGGCAT------
 A C G T A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAYMCTTGG
ARNTGACA-------
 A C G T A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAYMCTTGG
VGCTGWCAVB-----
 A C G T A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CTGGCAYMCTTGG
NNNCAGCTGTCAATATN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGGCAYMCTTGG----
--RGSMTBCTGGGAAAT
 A G T C A C G T A C T G C T A G A G T C G T C A G A C T T G C A A T G C A C G T A C G T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T