Information for 3-GGGCAAAGGGCAA (Motif 3)

C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
Reverse Opposite:
G C A T A C G T T A C G T G A C G A T C A G T C A G C T A G C T C G A T A T C G A G T C G A T C A G T C
p-value:1e-20
log p-value:-4.690e+01
Information Content per bp:1.755
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif77.4
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.4 +/- 25.9bp
Average Position of motif in Background48.7 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GGGCAAAGGGCAA
TAGGGCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---GGGCAAAGGGCAA
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--GGGCAAAGGGCAA
TGGGGCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGGCAAAGGGCAA
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GGGCAAAGGGCAA
GAGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGGCAAAGGGCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GGGCAAAGGGCAA
GAGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:8
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GGGCAAAGGGCAA-
AAAGGTCAAAGGTCAAC
 A C G T A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGGCAAAGGGCAA
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGGCAAAGGGCAA
GGGGTCAAAGGTCA-
 A C G T A C G T C T A G C T A G C T A G A T G C G C T A C T G A C T G A T A C G C A T G A C T G A G T C G T C A C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T