Information for 5-CGGATGCCACCAGCCA (Motif 26)

A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G A T C G A G T C A C G T A C T G C T A G A C G T A C T G A T C G A G T C G T C A A C G T A G T C A G T C T A C G
p-value:1e-8
log p-value:-1.911e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.5 +/- 23.5bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGGATGCCACCAGCCA
----TGACACCTGTCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGGATGCCACCAGCCA
---ATGCCAACC----
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGGATGCCACCAGCCA
----TGACACCTGTCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGGATGCCACCAGCCA
----CGCCCCCTGACA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGATGCCACCAGCCA
----TGCCCCCGGGCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGGATGCCACCAGCCA
ACTATGCCAACCTACC
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

TGIF2/MA0797.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CGGATGCCACCAGCCA
----TGACAGCTGTCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CGGATGCCACCAGCCA-
---------BCAGACWA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

TFAP2B/MA0811.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGGATGCCACCAGCCA
----TGCCCCAGGGCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CGGATGCCACCAGCCA
----TGCCCCAGGGCA
 A G T C A C T G A C T G C G T A A C G T A C T G A T G C A G T C C G T A A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A