Information for 2-CCTYTGMCCTAGA (Motif 2)

A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
Reverse Opposite:
C G A T G A T C A C G T T C G A A C T G C T A G C A T G A T G C C G T A C T A G C G T A C T A G A C T G
p-value:1e-26
log p-value:-6.178e+01
Information Content per bp:1.726
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.85%
Number of Background Sequences with motif139.7
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets42.5 +/- 23.1bp
Average Position of motif in Background46.8 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:1
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGCCCTAN-
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGCCCTA--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGCCCCA--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTCTGACCCCN-
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGACCTC--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGACCTN--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGACCCC--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGACCCC--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCTYTGMCCTAGA
TGACCTTTGACCCC--
 A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----CCTYTGMCCTAGA
GTTGACCTTTGACCTTT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A G T C A C G T A T C G G T A C A G T C G T A C A G C T T G C A C T A G C G T A
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T A C G T