Information for 6-CAGAARGSCMGGC (Motif 6)

A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C T G A T C G A T G C A G T C A C G T A C G T A G T C A C G T A C T G
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.838
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif36.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets44.3 +/- 24.4bp
Average Position of motif in Background50.2 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGAARGSCMGGC
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGAARGSCMGGC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGAARGSCMGGC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGAARGSCMGGC
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGAARGSCMGGC
CACAGCAGGGGG---
 A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CAGAARGSCMGGC
AAGGCCAGATGGTCCGG-
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CAGAARGSCMGGC
AACAGATGGC-----
 A C G T A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGAARGSCMGGC
CCAGACRSVB----
 A C G T A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CAGAARGSCMGGC----
---CAGGCCNNGGCCNN
 A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:CAGAARGSCMGGC--
-------CTAGGCCT
 A G T C G T C A A C T G G T C A C G T A C T A G A T C G A T G C G T A C G T C A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T