Information for 3-GCGGATTTGGCAG (Motif 2)

A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T C T A G A G T C A G T C C G T A C G T A G T C A A C G T A G T C A G T C C T A G A G T C
p-value:1e-12
log p-value:-2.838e+01
Information Content per bp:1.882
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.6 +/- 25.5bp
Average Position of motif in Background50.4 +/- 43.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GCGGATTTGGCAG-
----NNTTGGCANN
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.67
Offset:6
Orientation:forward strand
Alignment:GCGGATTTGGCAG
------TTGGCA-
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GCGGATTTGGCAG-
-----NTTGGCANN
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GCGGATTTGGCAG
-----CTTGGCAA
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGGATTTGGCAG
----GGTTGGCAT
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GCGGATTTGGCAG-
------TTGACAGC
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCGGATTTGGCAG
NNTGTGGATTSS----
 A C G T A C G T A C G T A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCGGATTTGGCAG
----ARNTGACA-
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCGGATTTGGCAG------
---GTATTGACAGGTNNTT
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCGGATTTGGCAG------
---GTATTGACAGCTNNTT
 A C T G A G T C C T A G A C T G G T C A A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T