Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 813)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48786)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-46	-1.066e+02	0.0000	61.0	7.50%	273.2	0.56%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-35	-8.127e+01	0.0000	143.0	17.59%	2582.4	5.31%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-28	-6.636e+01	0.0000	150.0	18.45%	3237.8	6.66%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-27	-6.347e+01	0.0000	56.0	6.89%	496.7	1.02%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-13	-3.189e+01	0.0000	12.0	1.48%	23.4	0.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-12	-2.883e+01	0.0000	17.0	2.09%	86.6	0.18%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-11	-2.676e+01	0.0000	55.0	6.77%	1108.3	2.28%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-10	-2.366e+01	0.0000	96.0	11.81%	2815.5	5.79%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-10	-2.303e+01	0.0000	104.0	12.79%	3193.6	6.56%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-9	-2.239e+01	0.0000	84.0	10.33%	2379.9	4.89%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-9	-2.236e+01	0.0000	134.0	16.48%	4585.3	9.43%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-9	-2.210e+01	0.0000	157.0	19.31%	5691.1	11.70%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-8	-2.067e+01	0.0000	114.0	14.02%	3785.8	7.78%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-8	-1.993e+01	0.0000	250.0	30.75%	10624.0	21.84%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-8	-1.872e+01	0.0000	63.0	7.75%	1702.7	3.50%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-8	-1.850e+01	0.0000	19.0	2.34%	216.3	0.44%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-7	-1.615e+01	0.0000	51.0	6.27%	1343.5	2.76%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.549e+01	0.0000	76.0	9.35%	2425.8	4.99%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.505e+01	0.0000	98.0	12.05%	3454.4	7.10%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-6	-1.474e+01	0.0000	53.0	6.52%	1490.9	3.06%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-6	-1.391e+01	0.0000	108.0	13.28%	4021.1	8.27%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.302e+01	0.0000	59.0	7.26%	1837.2	3.78%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.249e+01	0.0001	35.0	4.31%	880.4	1.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-5	-1.241e+01	0.0001	47.0	5.78%	1363.7	2.80%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.209e+01	0.0001	53.0	6.52%	1634.8	3.36%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-4	-1.149e+01	0.0001	56.0	6.89%	1802.3	3.70%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-4	-1.139e+01	0.0002	38.0	4.67%	1047.8	2.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-1.056e+01	0.0003	13.0	1.60%	189.6	0.39%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-1.036e+01	0.0004	19.0	2.34%	378.5	0.78%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-9.857e+00	0.0006	51.0	6.27%	1689.6	3.47%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-9.288e+00	0.0011	49.0	6.03%	1639.8	3.37%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-4	-9.265e+00	0.0011	9.0	1.11%	106.8	0.22%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-9.101e+00	0.0012	36.0	4.43%	1084.8	2.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-8.966e+00	0.0014	15.0	1.85%	286.0	0.59%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-8.712e+00	0.0017	20.0	2.46%	466.8	0.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3	-8.670e+00	0.0017	13.0	1.60%	229.7	0.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-8.586e+00	0.0018	65.0	8.00%	2437.4	5.01%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-3	-8.581e+00	0.0018	25.0	3.08%	661.9	1.36%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-3	-8.551e+00	0.0018	16.0	1.97%	330.6	0.68%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-3	-8.011e+00	0.0030	39.0	4.80%	1281.8	2.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.631e+00	0.0043	39.0	4.80%	1307.5	2.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3	-7.345e+00	0.0056	17.0	2.09%	406.9	0.84%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.014e+00	0.0076	9.0	1.11%	145.2	0.30%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-6.641e+00	0.0108	11.0	1.35%	217.2	0.45%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-6.589e+00	0.0111	31.0	3.81%	1022.9	2.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-2	-6.560e+00	0.0112	36.0	4.43%	1249.3	2.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-6.056e+00	0.0181	10.0	1.23%	200.2	0.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-5.830e+00	0.0223	9.0	1.11%	173.6	0.36%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.797e+00	0.0226	19.0	2.34%	553.2	1.14%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.541e+00	0.0286	47.0	5.78%	1860.4	3.82%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-5.434e+00	0.0312	9.0	1.11%	184.4	0.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-5.338e+00	0.0336	5.0	0.62%	64.3	0.13%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.108e+00	0.0415	24.0	2.95%	811.6	1.67%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-5.074e+00	0.0422	70.0	8.61%	3078.5	6.33%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.029e+00	0.0433	5.0	0.62%	69.0	0.14%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.945e+00	0.0463	9.0	1.11%	199.8	0.41%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-4.824e+00	0.0513	20.0	2.46%	652.3	1.34%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-4.752e+00	0.0542	113.0	13.90%	5419.2	11.14%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-4.654e+00	0.0588	29.0	3.57%	1077.6	2.22%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-4.647e+00	0.0588	9.0	1.11%	210.0	0.43%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-2	-4.619e+00	0.0588	29.0	3.57%	1080.7	2.22%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.494e+00	0.0656	21.0	2.58%	719.5	1.48%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-4.362e+00	0.0737	31.0	3.81%	1199.6	2.47%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-4.324e+00	0.0754	109.0	13.41%	5285.7	10.87%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-4.321e+00	0.0754	15.0	1.85%	465.1	0.96%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-4.256e+00	0.0782	50.0	6.15%	2159.0	4.44%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-4.176e+00	0.0834	23.0	2.83%	835.2	1.72%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-4.028e+00	0.0954	39.0	4.80%	1629.4	3.35%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.981e+00	0.0985	20.0	2.46%	711.7	1.46%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.963e+00	0.0989	28.0	3.44%	1092.2	2.25%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.949e+00	0.0989	38.0	4.67%	1588.8	3.27%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.947e+00	0.0989	8.0	0.98%	197.9	0.41%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.919e+00	0.0990	45.0	5.54%	1947.8	4.00%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.914e+00	0.0990	40.0	4.92%	1693.3	3.48%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.822e+00	0.1062	38.0	4.67%	1603.4	3.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.787e+00	0.1086	79.0	9.72%	3761.5	7.73%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.682e+00	0.1190	26.0	3.20%	1022.9	2.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.603e+00	0.1271	14.0	1.72%	465.2	0.96%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.389e+00	0.1554	10.0	1.23%	303.7	0.62%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.387e+00	0.1554	8.0	0.98%	220.5	0.45%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.386e+00	0.1554	6.0	0.74%	142.2	0.29%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-3.355e+00	0.1554	11.0	1.35%	348.3	0.72%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.346e+00	0.1554	15.0	1.85%	528.4	1.09%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.338e+00	0.1554	20.0	2.46%	764.6	1.57%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-3.281e+00	0.1610	29.0	3.57%	1213.3	2.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.238e+00	0.1661	92.0	11.32%	4582.1	9.42%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-3.197e+00	0.1710	2.0	0.25%	19.6	0.04%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.189e+00	0.1710	27.0	3.32%	1123.7	2.31%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.177e+00	0.1710	79.0	9.72%	3881.4	7.98%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.078e+00	0.1863	9.0	1.11%	277.7	0.57%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.036e+00	0.1922	6.0	0.74%	155.5	0.32%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.975e+00	0.2019	19.0	2.34%	749.7	1.54%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.969e+00	0.2019	8.0	0.98%	240.6	0.49%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.924e+00	0.2079	23.0	2.83%	952.8	1.96%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.874e+00	0.2164	27.0	3.32%	1160.2	2.38%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.855e+00	0.2183	5.0	0.62%	123.9	0.25%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.816e+00	0.2246	20.0	2.46%	814.8	1.67%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.803e+00	0.2252	181.0	22.26%	9735.9	20.01%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-2.799e+00	0.2252	18.0	2.21%	717.8	1.48%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-2.771e+00	0.2278	62.0	7.63%	3036.7	6.24%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.762e+00	0.2278	3.0	0.37%	54.9	0.11%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.746e+00	0.2289	17.0	2.09%	673.7	1.38%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.685e+00	0.2411	7.0	0.86%	212.6	0.44%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.657e+00	0.2454	31.0	3.81%	1396.0	2.87%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-2.655e+00	0.2454	38.0	4.67%	1764.6	3.63%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.636e+00	0.2462	3.0	0.37%	57.3	0.12%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-2.601e+00	0.2524	140.0	17.22%	7452.9	15.32%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.571e+00	0.2576	10.0	1.23%	353.5	0.73%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.511e+00	0.2710	234.0	28.78%	12915.3	26.55%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.504e+00	0.2710	77.0	9.47%	3923.3	8.06%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-2.384e+00	0.3021	14.0	1.72%	560.9	1.15%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.369e+00	0.3041	15.0	1.85%	611.9	1.26%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.361e+00	0.3041	30.0	3.69%	1386.4	2.85%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.350e+00	0.3046	11.0	1.35%	417.2	0.86%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.282e+00	0.3231	38.0	4.67%	1827.3	3.76%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.281e+00	0.3231	14.0	1.72%	570.2	1.17%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.257e+00	0.3256	34.0	4.18%	1616.9	3.32%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.242e+00	0.3278	15.0	1.85%	624.7	1.28%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.241e+00	0.3278	14.0	1.72%	574.7	1.18%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.236e+00	0.3278	3.0	0.37%	68.9	0.14%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.180e+00	0.3401	7.0	0.86%	241.0	0.50%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.179e+00	0.3401	20.0	2.46%	887.7	1.82%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.176e+00	0.3401	34.0	4.18%	1630.2	3.35%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.125e+00	0.3505	19.0	2.34%	842.8	1.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.111e+00	0.3526	12.0	1.48%	487.8	1.00%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.095e+00	0.3557	18.0	2.21%	794.2	1.63%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.082e+00	0.3575	10.0	1.23%	391.5	0.80%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.079e+00	0.3575	22.0	2.71%	1006.0	2.07%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.078e+00	0.3575	28.0	3.44%	1324.7	2.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.069e+00	0.3575	27.0	3.32%	1273.0	2.62%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.052e+00	0.3575	3.0	0.37%	74.7	0.15%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.993e+00	0.3757	31.0	3.81%	1500.3	3.08%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.987e+00	0.3757	25.0	3.08%	1178.7	2.42%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.968e+00	0.3796	3.0	0.37%	77.6	0.16%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.962e+00	0.3796	64.0	7.87%	3334.1	6.85%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.946e+00	0.3822	10.0	1.23%	403.2	0.83%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.925e+00	0.3875	11.0	1.35%	455.6	0.94%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.919e+00	0.3875	9.0	1.11%	356.5	0.73%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.897e+00	0.3929	14.0	1.72%	611.0	1.26%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.897e+00	0.3929	65.0	8.00%	3408.9	7.01%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.888e+00	0.3929	3.0	0.37%	80.1	0.16%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.879e+00	0.3929	16.0	1.97%	717.3	1.47%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.872e+00	0.3929	18.0	2.21%	823.4	1.69%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.833e+00	0.4044	34.0	4.18%	1694.0	3.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.795e+00	0.4171	58.0	7.13%	3041.4	6.25%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.772e+00	0.4238	78.0	9.59%	4182.2	8.60%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.764e+00	0.4243	3.0	0.37%	85.3	0.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.763e+00	0.4243	74.0	9.10%	3957.0	8.13%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.746e+00	0.4264	64.0	7.87%	3394.3	6.98%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.736e+00	0.4278	15.0	1.85%	683.6	1.41%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.718e+00	0.4324	20.0	2.46%	952.9	1.96%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.710e+00	0.4333	18.0	2.21%	846.9	1.74%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.687e+00	0.4405	21.0	2.58%	1011.6	2.08%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.674e+00	0.4433	7.0	0.86%	278.7	0.57%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.664e+00	0.4449	65.0	8.00%	3475.2	7.14%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.663e+00	0.4449	8.0	0.98%	329.7	0.68%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.661e+00	0.4449	33.0	4.06%	1674.7	3.44%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.633e+00	0.4500	55.0	6.77%	2916.9	6.00%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.629e+00	0.4500	33.0	4.06%	1681.7	3.46%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.626e+00	0.4500	21.0	2.58%	1021.2	2.10%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.609e+00	0.4522	23.0	2.83%	1133.6	2.33%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.603e+00	0.4522	7.0	0.86%	284.1	0.58%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.584e+00	0.4553	4.0	0.49%	139.3	0.29%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.584e+00	0.4553	4.0	0.49%	139.3	0.29%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.579e+00	0.4553	21.0	2.58%	1029.4	2.12%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.578e+00	0.4553	8.0	0.98%	337.1	0.69%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.559e+00	0.4584	18.0	2.21%	869.3	1.79%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.556e+00	0.4584	51.0	6.27%	2711.6	5.57%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.547e+00	0.4584	38.0	4.67%	1979.0	4.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.544e+00	0.4584	69.0	8.49%	3741.2	7.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.534e+00	0.4591	25.0	3.08%	1257.1	2.58%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.485e+00	0.4794	15.0	1.85%	718.4	1.48%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.458e+00	0.4898	11.0	1.35%	507.7	1.04%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.449e+00	0.4910	18.0	2.21%	887.5	1.82%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.436e+00	0.4948	30.0	3.69%	1556.3	3.20%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.433e+00	0.4948	9.0	1.11%	404.7	0.83%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.429e+00	0.4948	8.0	0.98%	352.5	0.72%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.425e+00	0.4948	9.0	1.11%	405.7	0.83%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.420e+00	0.4948	8.0	0.98%	353.9	0.73%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.404e+00	0.4968	38.0	4.67%	2015.1	4.14%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.398e+00	0.4969	51.0	6.27%	2757.2	5.67%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.397e+00	0.4969	1.0	0.12%	17.4	0.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.391e+00	0.4969	36.0	4.43%	1905.9	3.92%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.391e+00	0.4969	32.0	3.94%	1679.8	3.45%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.385e+00	0.4969	27.0	3.32%	1399.7	2.88%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.361e+00	0.5019	43.0	5.29%	2311.3	4.75%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.357e+00	0.5019	43.0	5.29%	2313.0	4.75%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.351e+00	0.5019	2.0	0.25%	59.3	0.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.348e+00	0.5019	1.0	0.12%	18.3	0.04%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.338e+00	0.5027	8.0	0.98%	362.4	0.74%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.315e+00	0.5116	9.0	1.11%	418.1	0.86%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.295e+00	0.5193	23.0	2.83%	1194.6	2.46%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.291e+00	0.5193	9.0	1.11%	422.0	0.87%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.289e+00	0.5193	32.0	3.94%	1704.7	3.50%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.276e+00	0.5212	58.0	7.13%	3199.7	6.58%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.272e+00	0.5212	65.0	8.00%	3605.2	7.41%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.272e+00	0.5212	66.0	8.12%	3663.5	7.53%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.271e+00	0.5212	38.0	4.67%	2051.1	4.22%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.266e+00	0.5212	6.0	0.74%	264.7	0.54%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.266e+00	0.5212	25.0	3.08%	1313.8	2.70%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.256e+00	0.5212	79.0	9.72%	4424.4	9.09%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.252e+00	0.5212	9.0	1.11%	426.6	0.88%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.251e+00	0.5212	26.0	3.20%	1373.7	2.82%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.238e+00	0.5212	26.0	3.20%	1376.2	2.83%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.234e+00	0.5212	14.0	1.72%	703.3	1.45%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.210e+00	0.5270	45.0	5.54%	2471.9	5.08%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.195e+00	0.5325	23.0	2.83%	1216.0	2.50%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.194e+00	0.5325	21.0	2.58%	1103.4	2.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.189e+00	0.5325	19.0	2.34%	992.0	2.04%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.189e+00	0.5325	80.0	9.84%	4510.5	9.27%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.139e+00	0.5522	21.0	2.58%	1115.6	2.29%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.134e+00	0.5524	23.0	2.83%	1230.7	2.53%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.127e+00	0.5539	25.0	3.08%	1346.0	2.77%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.123e+00	0.5539	19.0	2.34%	1005.1	2.07%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.106e+00	0.5601	5.0	0.62%	227.4	0.47%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.105e+00	0.5601	9.0	1.11%	447.0	0.92%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.084e+00	0.5673	9.0	1.11%	449.8	0.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.079e+00	0.5676	7.0	0.86%	339.2	0.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.066e+00	0.5725	63.0	7.75%	3569.2	7.34%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.044e+00	0.5822	10.0	1.23%	511.1	1.05%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.013e+00	0.5978	77.0	9.47%	4413.3	9.07%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.006e+00	0.5994	32.0	3.94%	1783.3	3.67%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.942e-01	0.6040	11.0	1.35%	576.3	1.18%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-9.853e-01	0.6067	17.0	2.09%	921.9	1.89%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.721e-01	0.6120	68.0	8.36%	3903.6	8.02%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.699e-01	0.6120	8.0	0.98%	410.9	0.84%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.699e-01	0.6120	14.0	1.72%	752.6	1.55%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-9.498e-01	0.6176	140.0	17.22%	8170.5	16.79%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-9.439e-01	0.6185	37.0	4.55%	2095.6	4.31%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.259e-01	0.6270	5.0	0.62%	247.4	0.51%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-9.176e-01	0.6295	171.0	21.03%	10032.1	20.62%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.068e-01	0.6309	2.0	0.25%	83.6	0.17%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.068e-01	0.6309	2.0	0.25%	83.5	0.17%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-9.020e-01	0.6312	23.0	2.83%	1290.5	2.65%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-9.015e-01	0.6312	5.0	0.62%	250.3	0.51%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.935e-01	0.6312	5.0	0.62%	251.4	0.52%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.880e-01	0.6320	77.0	9.47%	4475.9	9.20%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.856e-01	0.6320	7.0	0.86%	366.0	0.75%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.812e-01	0.6320	1.0	0.12%	32.5	0.07%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.599e-01	0.6419	57.0	7.01%	3306.3	6.80%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.595e-01	0.6419	3.0	0.37%	142.2	0.29%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.573e-01	0.6419	12.0	1.48%	660.4	1.36%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.526e-01	0.6419	172.0	21.16%	10139.8	20.84%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.365e-01	0.6463	24.0	2.95%	1368.1	2.81%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.244e-01	0.6515	22.0	2.71%	1254.1	2.58%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.190e-01	0.6515	3.0	0.37%	146.3	0.30%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.190e-01	0.6515	3.0	0.37%	146.8	0.30%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.126e-01	0.6515	2.0	0.25%	90.3	0.19%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.099e-01	0.6515	5.0	0.62%	262.6	0.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.999e-01	0.6543	14.0	1.72%	790.1	1.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.996e-01	0.6543	3.0	0.37%	148.8	0.31%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-7.995e-01	0.6543	46.0	5.66%	2682.2	5.51%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.879e-01	0.6544	2.0	0.25%	92.4	0.19%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.864e-01	0.6544	109.0	13.41%	6435.8	13.23%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.838e-01	0.6544	46.0	5.66%	2689.6	5.53%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.745e-01	0.6554	5.0	0.62%	267.8	0.55%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.705e-01	0.6555	46.0	5.66%	2695.5	5.54%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.670e-01	0.6555	10.0	1.23%	563.0	1.16%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.479e-01	0.6653	25.0	3.08%	1456.3	2.99%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.360e-01	0.6706	1.0	0.12%	40.0	0.08%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-7.260e-01	0.6748	82.0	10.09%	4864.1	10.00%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.214e-01	0.6753	8.0	0.98%	453.2	0.93%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.141e-01	0.6777	9.0	1.11%	514.3	1.06%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.137e-01	0.6777	28.0	3.44%	1647.5	3.39%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.887e-01	0.6899	74.0	9.10%	4409.4	9.06%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-6.856e-01	0.6899	19.0	2.34%	1119.7	2.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.824e-01	0.6899	52.0	6.40%	3096.1	6.36%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.738e-01	0.6924	35.0	4.31%	2082.3	4.28%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.627e-01	0.6975	111.0	13.65%	6642.2	13.65%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.585e-01	0.6979	20.0	2.46%	1188.8	2.44%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.524e-01	0.6995	1.0	0.12%	44.2	0.09%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.448e-01	0.7023	6.0	0.74%	348.5	0.72%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.423e-01	0.7023	60.0	7.38%	3598.5	7.40%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-6.372e-01	0.7024	1.0	0.12%	45.2	0.09%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.303e-01	0.7047	4.0	0.49%	229.1	0.47%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.300e-01	0.7047	15.0	1.85%	896.9	1.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.188e-01	0.7077	16.0	1.97%	960.6	1.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.174e-01	0.7077	36.0	4.43%	2168.5	4.46%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.076e-01	0.7106	5.0	0.62%	294.8	0.61%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.713e-01	0.7343	46.0	5.66%	2796.6	5.75%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.530e-01	0.7451	12.0	1.48%	737.4	1.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.523e-01	0.7451	22.0	2.71%	1349.2	2.77%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.449e-01	0.7459	13.0	1.60%	801.2	1.65%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.279e-01	0.7560	64.0	7.87%	3913.3	8.04%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.230e-01	0.7570	25.0	3.08%	1545.6	3.18%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.217e-01	0.7570	76.0	9.35%	4644.9	9.55%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.198e-01	0.7570	1.0	0.12%	54.6	0.11%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.164e-01	0.7570	59.0	7.26%	3618.2	7.44%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.103e-01	0.7570	2.0	0.25%	121.5	0.25%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.086e-01	0.7570	26.0	3.20%	1613.2	3.32%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.074e-01	0.7570	6.0	0.74%	377.4	0.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.003e-01	0.7570	13.0	1.60%	816.8	1.68%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.763e-01	0.7716	10.0	1.23%	637.3	1.31%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.739e-01	0.7716	4.0	0.49%	257.5	0.53%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.470e-01	0.7891	3.0	0.37%	197.6	0.41%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.401e-01	0.7919	41.0	5.04%	2572.2	5.29%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.379e-01	0.7919	13.0	1.60%	839.5	1.73%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.287e-01	0.7956	2.0	0.25%	133.4	0.27%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.146e-01	0.8042	29.0	3.57%	1848.6	3.80%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.119e-01	0.8042	10.0	1.23%	659.2	1.35%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.081e-01	0.8042	95.0	11.69%	5898.2	12.12%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.027e-01	0.8058	5.0	0.62%	339.8	0.70%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.008e-01	0.8058	9.0	1.11%	599.3	1.23%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.933e-01	0.8080	2.0	0.25%	139.4	0.29%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.880e-01	0.8096	3.0	0.37%	209.2	0.43%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.608e-01	0.8292	18.0	2.21%	1190.1	2.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.504e-01	0.8352	9.0	1.11%	618.6	1.27%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.433e-01	0.8384	10.0	1.23%	686.2	1.41%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.258e-01	0.8504	20.0	2.46%	1337.1	2.75%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.191e-01	0.8534	9.0	1.11%	631.1	1.30%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.127e-01	0.8562	16.0	1.97%	1089.7	2.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.006e-01	0.8638	115.0	14.15%	7247.1	14.90%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.958e-01	0.8652	2.0	0.25%	160.0	0.33%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.875e-01	0.8696	2.0	0.25%	161.6	0.33%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-2.711e-01	0.8812	18.0	2.21%	1244.2	2.56%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.600e-01	0.8881	6.0	0.74%	456.0	0.94%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.594e-01	0.8881	28.0	3.44%	1895.2	3.90%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.416e-01	0.8990	1.0	0.12%	93.0	0.19%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.304e-01	0.9063	13.0	1.60%	944.8	1.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.243e-01	0.9089	24.0	2.95%	1669.7	3.43%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.240e-01	0.9089	1.0	0.12%	96.7	0.20%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.108e-01	0.9156	71.0	8.73%	4661.7	9.58%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.103e-01	0.9156	24.0	2.95%	1682.5	3.46%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.052e-01	0.9156	7.0	0.86%	552.6	1.14%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.023e-01	0.9156	21.0	2.58%	1494.3	3.07%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.864e-01	0.9267	5.0	0.62%	420.5	0.86%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.634e-01	0.9453	28.0	3.44%	1994.5	4.10%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.618e-01	0.9453	8.0	0.98%	651.5	1.34%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.579e-01	0.9453	11.0	1.35%	865.0	1.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.460e-01	0.9532	114.0	14.02%	7466.6	15.35%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.385e-01	0.9574	11.0	1.35%	882.2	1.81%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.187e-01	0.9737	10.0	1.23%	832.5	1.71%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.010e-01	0.9881	1.0	0.12%	140.3	0.29%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-9.950e-02	0.9881	83.0	10.21%	5648.6	11.61%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.207e-02	0.9910	4.0	0.49%	411.5	0.85%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-7.762e-02	1.0000	2.0	0.25%	254.5	0.52%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.274e-02	1.0000	4.0	0.49%	432.7	0.89%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.162e-02	1.0000	16.0	1.97%	1349.2	2.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.065e-02	1.0000	4.0	0.49%	448.8	0.92%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.395e-02	1.0000	1.0	0.12%	176.3	0.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.337e-02	1.0000	6.0	0.74%	623.1	1.28%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.093e-02	1.0000	32.0	3.94%	2488.0	5.11%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.900e-02	1.0000	59.0	7.26%	4344.9	8.93%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.660e-02	1.0000	97.0	11.93%	6824.7	14.03%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.526e-02	1.0000	36.0	4.43%	2828.5	5.81%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.349e-02	1.0000	17.0	2.09%	1508.0	3.10%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.935e-02	1.0000	68.0	8.36%	5094.7	10.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.692e-02	1.0000	1.0	0.12%	244.8	0.50%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.486e-02	1.0000	66.0	8.12%	5018.5	10.32%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.556e-03	1.0000	60.0	7.38%	4777.8	9.82%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.921e-03	1.0000	53.0	6.52%	4317.7	8.88%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.830e-04	1.0000	42.0	5.17%	4061.0	8.35%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.000e-06	1.0000	43.0	5.29%	4823.5	9.92%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	155.3	0.32%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	12.5	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	8.6	0.02%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	33.6	0.07%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	21.2	0.04%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	0.0	0.00%	76.8	0.16%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	20.6	0.04%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	127.6	0.26%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.7	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	19.4	0.04%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.2	0.02%