Information for 2-RGGBCAAAGGGCA (Motif 2)

C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
Reverse Opposite:
G C A T A T C G G T A C A G T C G A T C A G C T A G C T A C G T A T C G T A G C G T A C A G T C A G C T
p-value:1e-28
log p-value:-6.487e+01
Information Content per bp:1.679
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif7.63%
Number of Background Sequences with motif607.9
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets51.2 +/- 21.8bp
Average Position of motif in Background51.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
TAGGGCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RGGBCAAAGGGCA
GTAGGGCAAAGGTCA
 A C G T A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-RGGBCAAAGGGCA
TGGGGCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
GAGGTCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
GAGGTCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--RGGBCAAAGGGCA
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
GGGGTCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
GGGGTCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-RGGBCAAAGGGCA
GGGGTCAAAGGTCA
 A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--RGGBCAAAGGGCA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A T A C G C A T G A T C G T A G C C G T A T C G A C T G A C T A G C T A G C A T G T A G C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A