Information for 5-TGGCAACACAGGA (Motif 8)

C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C G T A C T G C G A T C T A G A C G T A C G T A C T G A G T C A G T C C G T A
p-value:1e-12
log p-value:-2.928e+01
Information Content per bp:1.861
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.9 +/- 25.3bp
Average Position of motif in Background70.0 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGGCAACACAGGA
----AACAAAGG-
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCAACACAGGA---
AGAAGAACAAAGGACTA
 A C G T C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCAACACAGGA---
ATAAGAACAAAGGACTA
 A C G T C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGGCAACACAGGA
--GGAACAAAGR-
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TGGCAACACAGGA
--AAAACAAAGG-
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGGCAACACAGGA
SCCTAGCAACAG----
 A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGCAACACAGGA
----RACAAWGG-
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGGCAACACAGGA
---GAACAATGGN
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGGCAACACAGGA
--VRRACAAWGG-
 C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCAACACAGGA
TTGCCAAG------
 A C G T C G A T A C T G C T A G A G T C C G T A C G T A A G T C C G T A G T A C C G T A A C T G C T A G C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T