Information for 5-AGGACAAAGGGSWACT (Motif 7)

C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
Reverse Opposite:
C T G A A C T G A G C T C G A T A T G C G T A C A G T C A T G C A C G T A C G T A G C T A T C G A G C T A G T C A G T C A C G T
p-value:1e-13
log p-value:-3.046e+01
Information Content per bp:1.738
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.7 +/- 19.1bp
Average Position of motif in Background49.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGACAAAGGGSWACT
TAGGGCAAAGGTCA---
 A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AGGACAAAGGGSWACT
GTAGGGCAAAGGTCA---
 A C G T A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGACAAAGGGSWACT
AAAGGTCAAAGGTCAAC-
 A C G T A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGACAAAGGGSWACT
GGAACAAAGR------
 C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AGGACAAAGGGSWACT
TGGGGCAAAGGTCA---
 A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGGACAAAGGGSWACT
AAAACAAAGG------
 C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGACAAAGGGSWACT
GAGGTCAAAGGTCA---
 A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGGACAAAGGGSWACT
AAAACAATGG------
 C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGACAAAGGGSWACT
GAGGTCAAAGGTCA---
 A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGACAAAGGGSWACT
AGGGGTCAGAGGTCA---
 A C G T A C G T C G T A A C T G A C T G T C G A A T G C C T G A G T C A G T C A A T C G C T A G A C T G A T C G G C T A T C G A G T A C G A C T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T