Information for 10-WAAGGCATAACTC (Motif 16)

C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C
Reverse Opposite:
C T A G C T G A A C T G C A G T A C G T G C T A G C A T T A C G A G T C A G T C C G A T A C G T G C A T
p-value:1e-9
log p-value:-2.255e+01
Information Content per bp:1.715
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.37%
Number of Background Sequences with motif122.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets46.2 +/- 24.5bp
Average Position of motif in Background47.7 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:WAAGGCATAACTC-
--GGCCATAAATCA
 C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:WAAGGCATAACTC--
--GGCCATAAATCAC
 C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:WAAGGCATAACTC-
--GGCCATAAATCA
 C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--WAAGGCATAACTC--
NANAGGGATTAATTATN
 A C G T A C G T C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-WAAGGCATAACTC-
CAAAGGCGTGGCCAG
 A C G T C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:WAAGGCATAACTC-
---GCCATAAATCA
 C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--WAAGGCATAACTC--
TAGAGGGATTAAATTTC
 A C G T A C G T C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---WAAGGCATAACTC
NNATAAGGNN------
 A C G T A C G T A C G T C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0094.1_Zfp128_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--WAAGGCATAACTC--
TCTTTGGCGTACCCTAA
 A C G T A C G T C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:WAAGGCATAACTC-
--ATGCATAATTCA
 C G T A G T C A C G T A A C T G C T A G A T G C C G T A C G A T C G T A G C T A T G A C A G C T A G T C A C G T
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A