Information for 4-RRAGTTGCMRAGA (Motif 7)

C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C T G C T A G A G T C C G T A G T C A A G T C A C G T A G T C A G T C
p-value:1e-13
log p-value:-3.084e+01
Information Content per bp:1.870
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 26.7bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RRAGTTGCMRAGA
-CTGTTGCTAGGS
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A
A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RRAGTTGCMRAGA
---GGTGCCAAGT
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:RRAGTTGCMRAGA----
--KGTTGCTAGGMAACA
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:RRAGTTGCMRAGA----
---GTTGCCATGGNAAC
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RRAGTTGCMRAGA--
NNCGTTGCTATGGNN
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RRAGTTGCMRAGA---
-CAATTGCAAAAATAT
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T A C G T
A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:RRAGTTGCMRAGA
----TTGCCAAG-
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RRAGTTGCMRAGA----
--AGATGKDGAGATAAG
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A C T G G T C A A C G T A T C G C A G T C T A G T C A G C G T A A C T G C G T A A C G T C G T A C T G A T A C G

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RRAGTTGCMRAGA-
----TTCCKNAGAA
 C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T
A C G T A C G T A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A

PB0054.1_Rfx3_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----RRAGTTGCMRAGA------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T C T A G C T A G C G T A A C T G A C G T A C G T A C T G A G T C G T A C C T A G C G T A C T A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A