Information for 2-KGGGGCAAAGGKC (Motif 2)

A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C
Reverse Opposite:
T A C G T G A C G T A C G A T C G A C T A G C T A C G T A T C G T A G C A G T C G A T C G A T C T G C A
p-value:1e-38
log p-value:-8.868e+01
Information Content per bp:1.591
Number of Target Sequences with motif133.0
Percentage of Target Sequences with motif15.50%
Number of Background Sequences with motif1985.3
Percentage of Background Sequences with motif4.08%
Average Position of motif in Targets50.5 +/- 23.8bp
Average Position of motif in Background51.0 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:KGGGGCAAAGGKC-
TGGGGCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-KGGGGCAAAGGKC-
GTAGGGCAAAGGTCA
 A C G T A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
TAGGGCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

NR2C2/MA0504.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-KGGGGCAAAGGKC-
AGGGGTCAGAGGTCA
 A C G T A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
GAGGTCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
GAGGTCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
GGGGTCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
GGGGTCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:KGGGGCAAAGGKC-
GGGGTCAAAGGTCA
 A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-KGGGGCAAAGGKC-
AGAGTCCAAAGTCCA
 A C G T A C G T C T A G C T A G C T A G A T C G A T G C G T C A T C G A C T G A C T A G C A T G A C T G A G T C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A