Information for 15-CATACACCATWAA (Motif 17)

G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A
Reverse Opposite:
C A G T A C G T C G A T C G T A A C G T C T A G C T A G C G A T A T C G A C G T C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.363e+01
Information Content per bp:1.738
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif25.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.7 +/- 22.3bp
Average Position of motif in Background42.2 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATACACCATWAA
GYCATCMATCAT---
 A C G T A C G T G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CATACACCATWAA---
----NGYCATAAAWCH
 G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATACACCATWAA---
TCACCCATCAATAAACA
 A C G T G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CATACACCATWAA-
----NGCAATTAAA
 G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CATACACCATWAA-
-----GCAATAAAA
 G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CATACACCATWAA--
-AAAAACCATTAAGG
 G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T A C G T
A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CATACACCATWAA-
AAGCATACGCCCAACTT
 A C G T A C G T A C G T G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CATACACCATWAA
SSAATCCACANN---
 A C G T A C G T G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CATACACCATWAA
GCCATAAATCA----
 A C G T A C G T G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CATACACCATWAA-
----CCYMATAAAA
 G T A C C G T A A C G T T G C A A T G C G C T A A G T C A G T C G T C A G C A T G C T A G T C A G C T A A C G T
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A