Information for 11-TCDTGCCAAGTAG (Motif 13)

A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
Reverse Opposite:
G A T C A C G T C G T A G T A C A C G T A C G T A C T G A C T G T A G C G T C A G A T C A C T G C G T A
p-value:1e-11
log p-value:-2.739e+01
Information Content per bp:1.820
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif7.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.4 +/- 23.7bp
Average Position of motif in Background42.9 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
-GGTGCCAAGT--
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
-CGTGCCAAG---
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TCDTGCCAAGTAG
---TGCCAA----
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
-----CCAATTAA
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
--TTGCCAAG---
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCDTGCCAAGTAG----
-ACTCCTAATTAGTCGT
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G A C G T A C G T A C G T A C G T
A C G T G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

GBX1/MA0889.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TCDTGCCAAGTAG-
----ACTAATTAGC
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G A C G T
A C G T A C G T A C G T A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

Msx3/MA0709.1/Jaspar

Match Rank:8
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
-----CCAATTAA
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T A C G T A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

LBX2/MA0699.1/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TCDTGCCAAGTAG-
----GCCAATTAGC
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G A C G T
A C G T A C G T A C G T A C G T T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.62
Offset:5
Orientation:forward strand
Alignment:TCDTGCCAAGTAG
-----CCAATTAG
 A C G T G T A C C A T G A C G T A T C G A G T C G T A C C G T A C G T A A C T G A C G T C G T A C A T G
A C G T A C G T A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G