p-value: | 1e-8 |
log p-value: | -2.009e+01 |
Information Content per bp: | 1.737 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 0.57% |
Number of Background Sequences with motif | 1.0 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 50.2 +/- 28.9bp |
Average Position of motif in Background | 56.4 +/- 4.1bp |
Strand Bias (log2 ratio + to - strand density) | 0.6 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer
Match Rank: | 1 |
Score: | 0.58 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | ATCCATCCAGCCMGCC- ---CTGGCAGNCTGCCA |
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POL006.1_BREu/Jaspar
Match Rank: | 2 |
Score: | 0.53 |
Offset: | 8 |
Orientation: | forward strand |
Alignment: | ATCCATCCAGCCMGCC --------AGCGCGCC |
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Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer
Match Rank: | 3 |
Score: | 0.53 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC ------CCAGACRSVB |
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Hand1::Tcf3/MA0092.1/Jaspar
Match Rank: | 4 |
Score: | 0.53 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC ---ATGCCAGACN--- |
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ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer
Match Rank: | 5 |
Score: | 0.52 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | ATCCATCCAGCCMGCC -ATTTCCCAGVAKSCY |
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Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 6 |
Score: | 0.51 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC ------CCAGACAG-- |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 7 |
Score: | 0.50 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC ------BCAGACWA-- |
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POL009.1_DCE_S_II/Jaspar
Match Rank: | 8 |
Score: | 0.50 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC -----CACAGN----- |
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POL010.1_DCE_S_III/Jaspar
Match Rank: | 9 |
Score: | 0.50 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | ATCCATCCAGCCMGCC -------CAGCC---- |
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Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
Match Rank: | 10 |
Score: | 0.49 |
Offset: | 6 |
Orientation: | reverse strand |
Alignment: | ATCCATCCAGCCMGCC----- ------SCAGYCADGCATGAC |
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