Information for 13-GGGCCTTTGGCCT (Motif 19)

A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T
Reverse Opposite:
C G T A A C T G A C T G G T A C G T A C C G T A C G T A C T G A A C T G A C T G A G T C A G T C A G T C
p-value:1e-10
log p-value:-2.368e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.7 +/- 18.7bp
Average Position of motif in Background31.0 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT--
TGGACTTTGNNCTCN
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT---
TGGACTTTGNNCTNTG
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT-
TGACCTTTGCCCTA
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT--
TGACCTTTGCCCTAN
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT-
TGACCTTTGACCTN
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T
A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGCCTTTGGCCT-
TGACCTTTGCCCCA
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT-
TGACCTTTGACCTC
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCTTTGGCCT--
GTTGACCTTTGACCTTT
 A C G T A C G T A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T A C G T
T A C G G A C T A C G T A C T G C G T A A G T C A G T C A C G T C G A T A C G T A C T G C G T A G T A C A G T C A G C T G A C T C A G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGGCCTTTGGCCT
NAGGTCANTGACCT
 A C G T A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGGCCTTTGGCCT-
TGACCTTTGACCCC
 A C T G C T A G A C T G A G T C A G T C A G C T A C G T A C G T A C T G A C T G G T A C A G T C C G A T A C G T
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C