Information for 9-TAAGGATCCAAAC (Motif 12)

A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C
Reverse Opposite:
T A C G G A C T A G C T C G A T C T A G A C T G T C G A A G C T G A T C A G T C C G A T A C G T T C G A
p-value:1e-11
log p-value:-2.590e+01
Information Content per bp:1.695
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif157.8
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets58.6 +/- 25.9bp
Average Position of motif in Background48.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TAAGGATCCAAAC
--CGGTTTCAAA-
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAAGGATCCAAAC---
---ATATGCAAATNNN
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TAAGGATCCAAAC-
--AATATGCAAATT
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T
A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAAGGATCCAAAC
---TTATGCAAAT
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TAAGGATCCAAAC
---ATATGCAAAT
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAAGGATCCAAAC-
ATTTGCATACAATGG
 A C G T A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TAAGGATCCAAAC----
-TTGTATGCAAATTAGA
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TAAGGATCCAAAC
----TATGCAAAT
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TAAGGATCCAAAC----
-TTGTATGCAAATTAGA
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TAAGGATCCAAAC----
-TTGTATGCAAATTAGA
 A C G T T G C A C G T A C T A G C A T G C T G A A G C T T A G C A G T C C G T A C T G A C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A