Information for 9-TAATAAATTGHAGDCT (Motif 11)

A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
Reverse Opposite:
C G T A C T A G G A T C A G T C A G C T C G T A G T A C C G T A C G T A A C G T A G C T A C G T C G T A A C G T C G A T G T C A
p-value:1e-11
log p-value:-2.593e+01
Information Content per bp:1.779
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.6 +/- 15.5bp
Average Position of motif in Background56.0 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TAATAAATTGHAGDCT
TAGGTAATAAAATTCA----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TAATAAATTGHAGDCT
AAAGGTAATAAAATTT-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TAATAAATTGHAGDCT
AATGCAATAAAATTTAT---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TAATAAATTGHAGDCT
CCATAATTAATTACA----
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TAATAAATTGHAGDCT
GTCATAAAAN-------
 A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAATAAATTGHAGDCT
TAAGGTAATAAAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A A C G T A C G T A C G T A C G T A C G T

PAX3/MA0780.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TAATAAATTGHAGDCT
TAATCGATTA------
 A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TAATAAATTGHAGDCT
GCAATAAAA--------
 A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAATAAATTGHAGDCT
GGTAATAAAAA-------
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX7/MA0680.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TAATAAATTGHAGDCT
TAATCGATTA------
 A C G T C G T A C G T A A C G T C G T A C T G A C G T A C G A T A C G T C A T G G A C T C T G A C T A G C A T G A G T C A C G T
C G A T C T G A C G T A G A C T A G T C T C A G C T G A A C G T A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T