Information for 13-ACTTAGTTTT (Motif 42)

C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T
Reverse Opposite:
C T G A C G T A G T C A G T C A A G T C C G A T C G T A C T G A A T C G A G C T
p-value:1e-7
log p-value:-1.651e+01
Information Content per bp:1.809
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.53%
Number of Background Sequences with motif280.7
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets49.2 +/- 26.8bp
Average Position of motif in Background50.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ACTTAGTTTT
CCTTTGTTTT
 C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PH0094.1_Lhx4/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------ACTTAGTTTT-
TAAACTAATTAGCTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----ACTTAGTTTT-
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A C G T A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

PH0092.1_Lhx2/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------ACTTAGTTTT
NNNNNCTAATTAGTTTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACTTAGTTTT-
-TTAAGTGCTT
 C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--ACTTAGTTTT-----
ANNTCTATTGTTCNNNA
 A C G T A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACTTAGTTTT-
TTGACCTANTTATN
 A C G T A C G T A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACTTAGTTTT-----
NNTTTATTGTTCTNNN
 A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ACTTAGTTTT-----
AANTTATTGTTCTNNA
 A C G T C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ACTTAGTTTT------
-CTTTGTTTACTTTTN
 C T G A A T G C A G C T C G A T C G T A A C T G C A G T A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G C A T A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G A C T A G C T G C A T C G A T C A T G