Information for 19-GGCAGYCATSWTCTKG (Motif 29)

A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
Reverse Opposite:
A G T C T G A C T C G A A T C G C T G A C G A T A T G C G T C A A C G T A T C G C T A G A G T C G A C T A T C G G T A C T G A C
p-value:1e-9
log p-value:-2.197e+01
Information Content per bp:1.743
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 9.5bp
Average Position of motif in Background41.6 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG
-GCNGCCATCTTG---
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG
-GCCGCCATCTTG---
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:3
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG
----GTCATN------
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GGCAGYCATSWTCTKG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG--
-------ATGACCTTGAA
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GGCAGYCATSWTCTKG
GTCCGCCATTA-----
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG---
TAGCGCCCCCTGGTGGCCA
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GGCAGYCATSWTCTKG
---GGCCATTAAC---
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:GGCAGYCATSWTCTKG----
---NNNNATGACCTTGANTN
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.48
Offset:7
Orientation:forward strand
Alignment:GGCAGYCATSWTCTKG-
-------AACATCTGGA
 A C T G A C T G A T G C C T G A A C T G A G T C A T G C C G T A A C G T A T C G G C T A A G C T A T G C A G C T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C G T A T G C A C G T A C T G A C T G T G C A