Information for 7-GAATTTGTGAATC (Motif 17)

A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
Reverse Opposite:
C T A G C G T A A C G T A C G T A G T C C G T A A G T C G T C A C G T A C T G A A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.2 +/- 22.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAATTTGTGAATC
-AAGGTGTKAA--
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAATTTGTGAATC
-AATTAGTG----
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GAATTTGTGAATC
-AAGGTGTGAA--
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAATTTGTGAATC-
-AAGGTGTGAAAAT
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C A C G T
A C G T C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAATTTGTGAATC
--AGGTGTGAAA-
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTGTGAATC--
NAAANTTATTGAANCAN
 A C G T A C G T A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

TBX20/MA0689.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAATTTGTGAATC
-TAGGTGTGAAG-
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAATTTGTGAATC
ATGGAAAGTCGTAAAA-
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAATTTGTGAATC
GGACTGAATTCATGCC--
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAATTTGTGAATC
--AGGTGTGAAM-
 A C T G C G T A C G T A A G C T A C G T A C G T A C T G A C G T A C T G C G T A C G T A C G A T A G T C
A C G T A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T