Information for 3-GTGGCTAGTT (Motif 13)

A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T
Reverse Opposite:
C G T A C G T A G T A C C G A T C G T A C T A G A G T C A G T C C G T A T G A C
p-value:1e-12
log p-value:-2.948e+01
Information Content per bp:1.843
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.15%
Number of Background Sequences with motif85.0
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets55.2 +/- 22.4bp
Average Position of motif in Background48.9 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GTGGCTAGTT---
---ACTAGTTAAC
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTGGCTAGTT--
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTGGCTAGTT------
GAAAACTAGTTAACATC
 A C G T A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTGGCTAGTT
TWGTCTGV--
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GTGGCTAGTT--
----CTAATTAA
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PH0168.1_Hnf1b/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGGCTAGTT-------
ANNNCTAGTTAACNGNN
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCTAGTT
TGATTGGCTANN-
 A C G T A C G T A C G T A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCTAGTT
NNTGTGGTTT---
 A C G T A C G T A C G T A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTGGCTAGTT-----
---KCTATTTTTRGH
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTGGCTAGTT-----
---GCTATTTTTGGM
 A C T G A C G T A C T G T A C G G A T C A C G T C G T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C