Information for 5-THTGGACCTAAAT (Motif 8)

A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C T G A A C T G A C T G A C G T A T G C A T G C C G T A C G T A C G T A
p-value:1e-15
log p-value:-3.481e+01
Information Content per bp:1.880
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.4 +/- 24.2bp
Average Position of motif in Background33.4 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:THTGGACCTAAAT---
--TTGACCTANTTATN
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:THTGGACCTAAAT
---TGACCTARTT
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:THTGGACCTAAAT---
---GGCCATAAATCAC
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:THTGGACCTAAAT--
---GGCCATAAATCA
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:THTGGACCTAAAT
---TGACCTTGAT
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----THTGGACCTAAAT
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:THTGGACCTAAAT--
---GGCCATAAATCA
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:forward strand
Alignment:THTGGACCTAAAT---
------GCTAATTGCT
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

BARHL2/MA0635.1/Jaspar

Match Rank:9
Score:0.54
Offset:6
Orientation:forward strand
Alignment:THTGGACCTAAAT---
------GCTAAACGGT
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:THTGGACCTAAAT--
---NGYCATAAAWCH
 A C G T G A C T A C G T A T C G T A C G C G T A G T A C A G T C A G C T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A