Information for 9-GTCAGVCTTTGGA (Motif 9)

A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
Reverse Opposite:
C G A T A G T C A G T C G T C A C G T A C G T A A C T G A C T G A G T C A C G T A T C G C G T A A T G C
p-value:1e-11
log p-value:-2.742e+01
Information Content per bp:1.866
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.4 +/- 26.2bp
Average Position of motif in Background70.9 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCAGVCTTTGGA
---TGACCTTGAN
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Mafb/MA0117.2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGVCTTTGGA
NGTCAGCANTTT--
 A C G T A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GTCAGVCTTTGGA
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GTCAGVCTTTGGA--
-----CCTTTGATGT
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.52
Offset:8
Orientation:forward strand
Alignment:GTCAGVCTTTGGA-
--------TTGGCA
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GTCAGVCTTTGGA
-----CCWTTGTY
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTCAGVCTTTGGA
-BCAGACWA----
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GTCAGVCTTTGGA
---TGACCTTGAV
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GTCAGVCTTTGGA
------CTTTGT-
 A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GTCAGVCTTTGGA
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A T C G A C G T A T G C C G T A A C T G T A G C A G T C C G A T A C G T A C G T A C T G A C T G C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T