Information for 3-TAGCCATATAAGG (Motif 4)

A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C G A C T C G A T T C G A A C G T C G T A A C G T A C T G A C T G A T G C A G C T C G T A
p-value:1e-14
log p-value:-3.352e+01
Information Content per bp:1.841
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 16.1bp
Average Position of motif in Background60.2 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SRF/MA0083.3/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TAGCCATATAAGG---
TGACCATATATGGTCA
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:2
Score:0.83
Offset:3
Orientation:forward strand
Alignment:TAGCCATATAAGG--
---CCATATATGGNA
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

PB0078.1_Srf_1/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TAGCCATATAAGG--
-TTCCATATATGGAA
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T A C G T
A C G T G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TAGCCATATAAGG
---CCATATATGG
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G
A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TAGCCATATAAGG
-GNCTATAAAAGG
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TAGCCATATAAGG
AAGCCATAAAA--
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TAGCCATATAAGG-
----CAGATAAGGN
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T T A G C G C T A A C T G C G T A A C G T C G T A C G T A T A C G T C A G T C G A

PB0184.1_Tbp_2/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TAGCCATATAAGG----
--CCGATTTAAGCGACC
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

HLTF/MA0109.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TAGCCATATAAGG--
-----NNATAAGGNN
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TAGCCATATAAGG
--GCAATAAAA--
 A C G T C T G A A T C G A G T C A G T C C G T A C G A T C G T A A C G T C G T A C G T A A C T G A C T G
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T