Information for 21-AAGTGKHTADCTG (Motif 39)

C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
Reverse Opposite:
A G T C C G T A A T C G G C A T A G C T T G C A C T G A G T A C G A T C C G T A A G T C C G A T A C G T
p-value:1e-7
log p-value:-1.727e+01
Information Content per bp:1.750
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.2 +/- 30.4bp
Average Position of motif in Background46.9 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0004.1_Nkx3-2/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------AAGTGKHTADCTG
NTNNTTAAGTGGTTANN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AAGTGKHTADCTG
NTCAAGTGGN------
 A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGKHTADCTG
TTAAGTGGN------
 A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAGTGKHTADCTG
TTRAGTGSYK-----
 A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AAGTGKHTADCTG
TTAAGTGGT------
 A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AAGTGKHTADCTG
NTNNTTAAGTGGNTNAN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------AAGTGKHTADCTG
AATNTTAAGTGGNTNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------AAGTGKHTADCTG
NANTTTCAAGTGGTTAN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AAGTGKHTADCTG
NTCAAGTGG-------
 A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AAGTGKHTADCTG
AAATTCAAGTGGNTTN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C T A G A C G T C A T G C A T G G A C T A C G T C T G A C G T A T A G C C G A T A C T G
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T A C G T A C G T