Information for 17-GACAGCCAGCTAA (Motif 35)

A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
Reverse Opposite:
G C A T A C G T C G T A T A C G A T G C C G A T A C T G T A C G A T G C A C G T A C T G A C G T T G A C
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.688
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif214.1
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets49.3 +/- 28.1bp
Average Position of motif in Background55.2 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GACAGCCAGCTAA
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GACAGCCAGCTAA
-BCAGACWA----
 A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GACAGCCAGCTAA
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACAGCCAGCTAA
TGGCAGNCTGCCAG
 A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACAGCCAGCTAA
-CCAGACAG----
 A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GACAGCCAGCTAA
TTGACAGC-------
 A C G T A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GACAGCCAGCTAA-
AGAGRRACAGCWGAC
 A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A A C G T
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GACAGCCAGCTAA
----CACAGN---
 A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GACAGCCAGCTAA---
-SCAGYCADGCATGAC
 A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GACAGCCAGCTAA
TGGCACCATGCCAA
 A C G T A C T G T G C A G T A C C G T A A T C G A G T C T A G C C G T A A T C G A T G C A C G T T G C A C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A