Information for 18-AYARAGCTTGGCTTCT (Motif 28)

C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
Reverse Opposite:
C T G A A C T G G T C A C G T A A C T G G A T C G A T C C G T A C T G A C T A G A T G C C G A T A G C T A C G T C T A G A C G T
p-value:1e-8
log p-value:-2.054e+01
Information Content per bp:1.769
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.8 +/- 20.9bp
Average Position of motif in Background64.1 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AYARAGCTTGGCTTCT
-------TTGACTTTT
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AYARAGCTTGGCTTCT
---AAGCTTG------
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AYARAGCTTGGCTTCT
ACAAAG----------
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AYARAGCTTGGCTTCT
VRRACAAWGG---------
 A C G T A C G T A C G T C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AYARAGCTTGGCTTCT
TCAGNGAGCGTGAC----
 A C G T A C G T C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.52
Offset:10
Orientation:forward strand
Alignment:AYARAGCTTGGCTTCT
----------GCTTCC
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AYARAGCTTGGCTTCT-
-----GTTTCACTTCCG
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AYARAGCTTGGCTTCT
GGAACAAAGR---------
 A C G T A C G T A C G T C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:AYARAGCTTGGCTTCT
---NNACTTGCCTT--
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.48
Offset:0
Orientation:forward strand
Alignment:AYARAGCTTGGCTTCT
GTCATGCHTGRCTGS-
 C G T A A G T C C G T A T C G A C G T A A T C G A G T C G A C T A C G T C A T G C A T G G T A C A C G T A C G T G T A C G A C T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T