Information for 12-CAGTCTAAAAACC (Motif 23)

A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C
Reverse Opposite:
A C T G T A C G G A C T G C A T A C G T A C G T A C G T C T G A A C T G C G T A T A G C A C G T T A C G
p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.695
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif173.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets47.3 +/- 23.7bp
Average Position of motif in Background45.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGTCTAAAAACC----
--GTATAAAAGGCGGGG
 A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGTCTAAAAACC----
--GTATAAAAGGCGGGG
 A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTAAAAACC
BCAGACWA------
 A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTAAAAACC
NCTAAGTAAACA--
 A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGTCTAAAAACC
TCAGTCTT------
 A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAGTCTAAAAACC
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAGTCTAAAAACC-
AGAGTCCAAAGTCCA
 A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCTAAAAACC-
NCWRWGTAAACANSV
 A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAGTCTAAAAACC-
CANAGNNCAAAGTCCA
 A C G T A C G T A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGTCTAAAAACC--
CAAAGTAAACANNNN
 A G T C C G T A A T C G G C A T T A G C G A C T G T C A T C G A C G T A C G T A C T G A A T G C G T A C A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A