Information for 11-RCTGTRWATATGC (Motif 21)

C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T C G T A A C G T C G A T A G C T C G T A A G T C C G T A A C T G A G C T
p-value:1e-9
log p-value:-2.256e+01
Information Content per bp:1.894
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 19.2bp
Average Position of motif in Background47.5 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RCTGTRWATATGC
---ATGMATATDC
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

FOXB1/MA0845.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:RCTGTRWATATGC
TATGTAAATAT--
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-RCTGTRWATATGC---
ANNNGGATATATCCNNN
 A C G T C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RCTGTRWATATGC----
--YATGCATATRCATRT
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

PB0198.1_Zfp128_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RCTGTRWATATGC-
NNTATANATATACN
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C A C G T
A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

Bhlha15/MA0607.1/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:RCTGTRWATATGC
-----ACATATGG
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RCTGTRWATATGC
-ATGTAAACADGS
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
A C G T C G T A C A G T T C A G C G A T G T C A G T C A C G T A A G T C C G T A C G A T A T C G A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCTGTRWATATGC
GCTGTG-------
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RCTGTRWATATGC
---ATGAATATTC
 C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----RCTGTRWATATGC
NNNCAGCTGTCAATATN-
 A C G T A C G T A C G T A C G T A C G T C T G A A G T C C G A T A C T G A C G T C T G A G C A T C G T A A C G T C G T A A C G T A C T G A G T C
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T