Information for 2-CTAATTAGGC (Motif 15)

A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
Reverse Opposite:
T C A G G A T C A G T C C G A T T C G A C G T A C G A T A G C T C G T A A C T G
p-value:1e-11
log p-value:-2.734e+01
Information Content per bp:1.742
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif209.0
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets46.7 +/- 25.2bp
Average Position of motif in Background51.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX4/MA0068.2/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:CTAATTAGGC
CTAATTAG--
 A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGGC--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

LHX6/MA0658.1/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGGC
ACTAATTAGC-
 A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C A C G T

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTAATTAGGC
CTAATTAG--
 A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

PH0034.1_Gbx2/Jaspar

Match Rank:5
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGGC---
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

LHX2/MA0700.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTAATTAGGC
ACTAATTAAC-
 A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

NOTO/MA0710.1/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-CTAATTAGGC
NNTAATTAGN-
 A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T

PH0131.1_Pax4/Jaspar

Match Rank:8
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CTAATTAGGC---
TGAACTAATTAGCCCAC
 A C G T A C G T A C G T A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C A C G T A C G T A C G T
G C A T T A C G T C G A C G T A A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G A T C A G T C T A G C C T G A G T A C

Lhx8/MA0705.1/Jaspar

Match Rank:9
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CTAATTAGGC
CTAATTAG--
 A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C
A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G A C G T A C G T

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATTAGGC--
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C T G A G C T A C G A T A G C T C G T A C T A G C T A G A G T C A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T