Information for 1-HTNRCCACTAGAKGGC (Motif 1)

G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C
Reverse Opposite:
C T A G T A G C A G T C G T A C A G C T A G T C A C G T C T G A T A C G A G C T A C T G C A T G G A T C G C A T C T G A C A T G
p-value:1e-41
log p-value:-9.628e+01
Information Content per bp:1.676
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif5.03%
Number of Background Sequences with motif58.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets51.3 +/- 23.4bp
Average Position of motif in Background47.4 +/- 35.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC-----
-TGGCCACCAGGTGGCACTNT
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:HTNRCCACTAGAKGGC----
-TGGCCACCAGGGGGCGCTA
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC-------
---GCCASCAGGGGGCGCYVNNG
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC
------AACAGATGGC
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC
------AACAGATGGT
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.57
Offset:7
Orientation:forward strand
Alignment:HTNRCCACTAGAKGGC---
-------CAAGATGGCGGC
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:HTNRCCACTAGAKGGC---
-------CAAGATGGCGGC
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC--
------AACAGATGGTCN
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:HTNRCCACTAGAKGGC
----VNAVCAGCTGGC
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C
A C G T A C G T A C G T A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:HTNRCCACTAGAKGGC
------AACAKATGGY
 G T A C A G C T C G T A C T A G G T A C A G T C C T G A A T G C G A C T C G T A A C T G C T G A C A T G A C T G A C T G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T