Information for 13-AGGCGGCCAGCCC (Motif 18)

C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
Reverse Opposite:
C T A G A C T G A C T G A G T C A C G T A C T G A C T G A G T C G A T C A C T G A G T C A G T C A C G T
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.6 +/- 19.8bp
Average Position of motif in Background62.5 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGGCGGCCAGCCC
CTGGCAGNCTGCCA
 A C G T C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGCGGCCAGCCC---
ACTATGCCAACCTACC
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AGGCGGCCAGCCC
-------CAGCC-
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AGGCGGCCAGCCC--
TTGGCANNNTGCCAAG
 A C G T C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:AGGCGGCCAGCCC
----TGCCAA---
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AGGCGGCCAGCCC
---ATGCCAACC-
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGCGGCCAGCCC
--CGTGCCAAG--
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGGCGGCCAGCCC
---ATGCCAGACN
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGCGGCCAGCCC
-VGCTGWCAVB--
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGGCGGCCAGCCC-
------BCAGACWA
 C G T A A C T G A C T G A G T C C A T G A C T G A G T C A G T C C G T A A C T G A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A