Information for 5-CAATGCTGCCACCTAT (Motif 3)

A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
Reverse Opposite:
C G T A A G C T C G T A A C T G C T A G A C G T A T C G A C T G A G T C C G T A A C T G G A T C G T C A C G A T C G A T A T C G
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.820
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 12.2bp
Average Position of motif in Background43.3 +/- 9.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT
------TGACACCT--
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT--
------TGACACCTGTCA
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT--
------TGACACCTGTCA
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAATGCTGCCACCTAT--
-ATAAATGACACCTATCA
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T A C G T A C G T
A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAATGCTGCCACCTAT
-CTGTCTGTCACCT--
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT--
------TGACAGCTGTCA
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT
--TGTCTGDCACCT--
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT
------TCACACCT--
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C T C G A A G T C T G C A G T A C A G T C G A C T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT
------TCACACCT--
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T G A C C T G A A G T C T C G A A T G C A G T C G A C T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAATGCTGCCACCTAT-----
----NTCNTCCCCTATNNGNN
 A T G C G C T A C G T A A C G T C T A G G T A C C G A T A C T G T G A C A T G C G T C A A G T C A G T C A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A