Information for 6-AAGATTTAYTGCT (Motif 7)

C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
Reverse Opposite:
C T G A C T A G A T G C C G T A C T G A A G C T C G T A C G T A C G T A G A C T A G T C A G C T C G A T
p-value:1e-12
log p-value:-2.772e+01
Information Content per bp:1.784
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.0 +/- 27.7bp
Average Position of motif in Background38.4 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AAGATTTAYTGCT
NTGATTTATGGCC
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AAGATTTAYTGCT
-TGATTTATGGCC
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AAGATTTAYTGCT---
NAATTTTATTACCNNN
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AAGATTTAYTGCT
-TGATTTATGGCC
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hmx1/MA0896.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTTAYTGCT---
ANNCATTAATTGCTNGN
 A C G T C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTTAYTGCT---
ANNCATTAATTGCTNGN
 A C G T C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T A C G T A C G T A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAGATTTAYTGCT
-DGWTTTATGRCN
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAGATTTAYTGCT--
NGANTTTTATGGCTCN
 A C G T C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGATTTAYTGCT
--NTTTTATTACN
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:AAGATTTAYTGCT-
---TTTTATGGCTN
 C G T A C T G A C T A G C T G A A C G T A C G T C G A T C T G A A G C T C G A T A T C G A G T C A G C T A C G T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T